TOPMed OMICS Progress Report
Last updated : 04/25/2024
This page reports TOPMed Omics data received by the IRC.
OMICS sample numbers by study
RNA-seq
Methylation
Metabolomics
Proteomics
RNA-seq progress over time
RNA-seq QC metrics
This table shows aggregates across studies for many metrics of RNA-seq quality.
Histogram of QC Measure
Cilck rows in the QC metrics table
Per sample RNA-seq quality metrics
Please log in using Google to download individual level QC results. Email tblackw@umich.edu if you aren't already on the whole genome sequence whitelist.
OMICS sample numbers by production center
| RNA-seq | Methylation | Metabolomics | Proteomics | Total by Center | |
|---|---|---|---|---|---|
| Broad | - | - | - | - | - |
| NWGC | - | - | - | - | - |
| NYGC | - | - | - | - | - |
| USC | - | - | - | - | - |
| Baylor | - | - | - | - | - |
| Total by Type | - | - | - | - |
Technical:
Stranded, poly-A-selected RNA, 101 bp paired end NovaSeq, target 75 M reads per sample for blood samples, 50 M reads per sample for tissue, cell sorted or globin-depleted blood samples.
Illumina EPIC methylation array, ~850 k sites.
Four metabolomics assay types: C8-pos, C-18-neg, HILIC-pos (all untargeted), plus Amide-neg with multiple reaction monitoring for ~200 target metabolites.